What are the best hotels in Mission Bay?

Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Beach-2-Bay 1br - In the Heart of Mission Beach, Bayside Bikini 2, and In the Heart of Mission Beach - A Pineapple Paradise are all recommended on KAYAK.

Which hotels in Mission Bay are romantic?

If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Hotels in Mission Bay (San Diego) from €37/night

KAYAK searches hundreds of travel sites at once for hotels in Mission Bay

...and more

Here is why travellers choose KAYAK

Free to useThere are no hidden charges or fees.

Filter your dealsFilter by free cancellation, free breakfast and more.

Millions of reviewsCheck ratings based on millions of real guest reviews.

Best hotels in Mission Bay (San Diego)

Paradise Point Resort & Spa

Mission Bay

8.1Very Good(1863)

Free Wi-Fi

Pool

Pet friendly

Air conditioning

Low season	August
High season	December
Average price (weekend night)	€394

Hotels in Mission Bay, San Diego

KAYAK searches hundreds of travel sites at once for hotels in Mission Bay

Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

Search by stars

Search by review score

Search by price

Search by freebies

KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in August, with average rates of €83. In comparison, December is the most expensive month, with prices at €770.

What is the cheapest day of the week to book a hotel in Mission Bay?

Sunday offers the lowest rates in Mission Bay, with an average nightly price of €191. The highest prices are found on Friday, with average rates at €346.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was €119, while a 4-star hotel the lowest price was €185. The cheapest room found overall was for €119.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for €218 per night. For the same dates, 3-star hotel rooms have been found for as low as €218 per night and 4-star hotel rooms from €213 per night.

How much is a Mission Bay hotel?

2 stars and below

3 stars

4 stars and above

Good to know

Low season

High season

Average price (weekend night)

Top tips for finding a hotel deal in Mission Bay

FAQs when booking a hotel in Mission Bay

What are the best hotels in Mission Bay?

Which hotels in Mission Bay are romantic?

Where to stay in Mission Bay?

What Mission Bay hotel guests are talking about

Hotels about topic

Popular topics

Everything you need to know for your stay in San Diego

Hotels near airports in San Diego